An image-based transcriptomics atlas reveals the regional and microbiota-dependent molecular, cellular, and spatial structure of the murine gut.

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Title: An image-based transcriptomics atlas reveals the regional and microbiota-dependent molecular, cellular, and spatial structure of the murine gut.
Authors: Xu RJ; Program in Cellular and Molecular Medicine, Boston Children's Hospital, Boston, MA 02115, USA.; Department of Microbiology, Blavatnik Institute, Harvard Medical School, Boston, MA 02115, USA.; Department of Chemistry and Chemical Biology, Harvard University, Cambridge, MA 02138, USA., Cadinu P; Program in Cellular and Molecular Medicine, Boston Children's Hospital, Boston, MA 02115, USA.; Department of Microbiology, Blavatnik Institute, Harvard Medical School, Boston, MA 02115, USA., Nicol PB; Department of Data Science, Dana-Farber Cancer Institute, Boston, MA 02115, USA.; Department of Biostatistics, Harvard T. H. Chan School of Public Health, Boston, MA 02115, USA., Herrmann US; Program in Cellular and Molecular Medicine, Boston Children's Hospital, Boston, MA 02115, USA.; Department of Microbiology, Blavatnik Institute, Harvard Medical School, Boston, MA 02115, USA., Lee T; Core for Computational Biomedicine, Department of Biomedical Informatics, Blavatnik Institute, Harvard Medical School, Boston, MA 02115, USA., Geistlinger L; Core for Computational Biomedicine, Department of Biomedical Informatics, Blavatnik Institute, Harvard Medical School, Boston, MA 02115, USA., Irizarry RA; Department of Data Science, Dana-Farber Cancer Institute, Boston, MA 02115, USA.; Department of Biostatistics, Harvard T. H. Chan School of Public Health, Boston, MA 02115, USA., Moffitt JR; Program in Cellular and Molecular Medicine, Boston Children's Hospital, Boston, MA 02115, USA.; Department of Microbiology, Blavatnik Institute, Harvard Medical School, Boston, MA 02115, USA.; Broad Institute of Harvard and MIT, Cambridge, MA 02142, USA.; Lead contact.
Source: BioRxiv : the preprint server for biology [bioRxiv] 2025 Jul 24. Date of Electronic Publication: 2025 Jul 24.
Publication Type: Journal Article; Preprint
Journal Info: Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet ISSN: 2692-8205 (Electronic) Linking ISSN: 26928205 NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE
Database: MEDLINE Ultimate
Description
ISSN:2692-8205
DOI:10.1101/2025.07.21.665958