HLA Ligand Atlas DIA: extending the benign immunopeptidomics resource with increased sensitivity through data-independent acquisition mass spectrometry.

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Title: HLA Ligand Atlas DIA: extending the benign immunopeptidomics resource with increased sensitivity through data-independent acquisition mass spectrometry.
Authors: Bichmann L; Center for Systems and Engineering Immunology, Yale University, New Haven, Connecticut, USA leon.bichmann@yale.edu.; Interfaculty Institute for Cell Biology and Immunology, University of Tübingen, Tübingen, Germany., Marcu A; Interfaculty Institute for Cell Biology and Immunology, University of Tübingen, Tübingen, Germany.; Genentech, San Francisco, California, USA., Kowalewski DJ; Interfaculty Institute for Cell Biology and Immunology, University of Tübingen, Tübingen, Germany., Freudenmann LK; Interfaculty Institute for Cell Biology and Immunology, University of Tübingen, Tübingen, Germany., Backert L; Interfaculty Institute for Cell Biology and Immunology, University of Tübingen, Tübingen, Germany., Mühlenbruch L; Interfaculty Institute for Cell Biology and Immunology, University of Tübingen, Tübingen, Germany.; Department of Peptide-based Immunotherapy, University Hospital Tübingen, Baden-Württemberg, Germany., Lübke M; Interfaculty Institute for Cell Biology and Immunology, University of Tübingen, Tübingen, Germany., Wagner P; Interfaculty Institute for Cell Biology and Immunology, University of Tübingen, Tübingen, Germany.; Obstetrics and Gynecology, University Hospital of Tübingen, University of Tübingen, Tübingen, Germany., Engler T; Obstetrics and Gynecology, University Hospital of Tübingen, University of Tübingen, Tübingen, Germany., Matovina S; Obstetrics and Gynecology, University Hospital of Tübingen, University of Tübingen, Tübingen, Germany., Hauri-Hohl M; Pediatric Stem Cell Transplantation, University Children's Hospital Zurich, University Hospital Zurich, Zurich, Switzerland., Martin R; Neuroimmunology and MS Research, Institute of Experimental Immunology, University of Zurich, Zürich, ZH, Switzerland., Moch H; Pathology, University Hospital Zurich, Zurich, Switzerland., Regli L; Clinical Neuroscience Center and Department of Neurosurgery, University Hospital Zurich, Zurich, Switzerland.; Neuroscience Center Zurich (ZNZ), University of Zurich, Zürich, Switzerland., Weller M; Neuroscience Center Zurich (ZNZ), University of Zurich, Zürich, Switzerland.; Laboratory of Molecular Neuro-Oncology, Department of Neurology, University Hospital Zurich, Zürich, Switzerland., Löffler MW; Interfaculty Institute for Cell Biology and Immunology, University of Tübingen, Tübingen, Germany.; Institute for Clinical and Experimental Transfusion Medicine, University Hospital Tübingen, Tübingen, Germany., Walz JS; Interfaculty Institute for Cell Biology and Immunology, University of Tübingen, Tübingen, Germany.; Department of Peptide-based Immunotherapy, University Hospital Tübingen, Baden-Württemberg, Germany., Kohlbacher O; Applied Bioinformatics, University of Tübingen, Tübingen, Germany.; Institute for Bioinformatics and Medical Informatics, University Hospitals Tubingen, Tübingen, Germany., Röst H; Donnelly Centre for Cellular and Biomolecular Research, University of Toronto, Toronto, Ontario, Canada., Rammensee HG; Interfaculty Institute for Cell Biology and Immunology, University of Tübingen, Tübingen, Germany., Neidert MC; Neuroscience Center Zurich (ZNZ), University of Zurich, Zürich, Switzerland.; Department of Neurosurgery, Cantonal Hospital St.Gallen, HOCH Health Ostschweiz, St. Gallen, SG, Switzerland.
Source: Journal for immunotherapy of cancer [J Immunother Cancer] 2025 Aug 31; Vol. 13 (8). Date of Electronic Publication: 2025 Aug 31.
Publication Type: Journal Article
Journal Info: Publisher: BMJ Publishing Group Ltd Country of Publication: England NLM ID: 101620585 Publication Model: Electronic Cited Medium: Internet ISSN: 2051-1426 (Electronic) Linking ISSN: 20511426 NLM ISO Abbreviation: J Immunother Cancer Subsets: MEDLINE
Database: MEDLINE Ultimate
Description
ISSN:2051-1426
DOI:10.1136/jitc-2025-012083