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GPS Pipeline: portable, scalable genomic pipeline for Streptococcus pneumoniae surveillance from Global Pneumococcal Sequencing Project.

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Title: GPS Pipeline: portable, scalable genomic pipeline for Streptococcus pneumoniae surveillance from Global Pneumococcal Sequencing Project.
Authors: Hung HCH; Parasites and Microbes, Wellcome Sanger Institute, Hinxton, UK. ch31@sanger.ac.uk., Kumar N; Parasites and Microbes, Wellcome Sanger Institute, Hinxton, UK., Dyster V; Parasites and Microbes, Wellcome Sanger Institute, Hinxton, UK., Yeats C; Centre for Genomic Pathogen Surveillance, Pandemic Sciences Institute, University of Oxford, Oxford, UK., Metcalf B; Division of Bacterial Diseases, Centers for Disease Control and Prevention, Atlanta, USA., Li Y; Division of Bacterial Diseases, Centers for Disease Control and Prevention, Atlanta, USA., Hawkins PA; Division of Bacterial Diseases, Centers for Disease Control and Prevention, Atlanta, USA., McGee L; Division of Bacterial Diseases, Centers for Disease Control and Prevention, Atlanta, USA., Bentley SD; Parasites and Microbes, Wellcome Sanger Institute, Hinxton, UK., Lo SW; Parasites and Microbes, Wellcome Sanger Institute, Hinxton, UK. sl28@sanger.ac.uk.; Milner Centre for Evolution, Department of Life Sciences, University of Bath, Bath, UK. sl28@sanger.ac.uk.; The Great Ormond Street Institute of Child Health, University College London, London, UK. sl28@sanger.ac.uk.
Source: Nature communications [Nat Commun] 2025 Sep 24; Vol. 16 (1), pp. 8345. Date of Electronic Publication: 2025 Sep 24.
Publication Type: Journal Article
Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE
Database: MEDLINE Ultimate
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ISSN:2041-1723
DOI:10.1038/s41467-025-64018-5