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An audit of the PeptideAtlas database uncovers evidence for repurposed pseudogenes and co-opted retroviral ORFs.

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Title: An audit of the PeptideAtlas database uncovers evidence for repurposed pseudogenes and co-opted retroviral ORFs.
Authors: Rodriguez JM; Cardiovascular Proteomics Laboratory, Centro Nacional de Investigaciones Cardiovasculares Carlos III (CNIC), Madrid, 28029, Spain.; CIBER de Enfermedades Cardiovasculares (CIBERCV), Madrid, 28029, Spain., Maquedano M; Bioinformatics Unit, Spanish National Cancer Research Centre (CNIO), Madrid, 28029, Spain., Cerdán-Vélez D; Bioinformatics Unit, Spanish National Cancer Research Centre (CNIO), Madrid, 28029, Spain., Laguillo-Gómez A; Cardiovascular Proteomics Laboratory, Centro Nacional de Investigaciones Cardiovasculares Carlos III (CNIC), Madrid, 28029, Spain., Calvo E; Cardiovascular Proteomics Laboratory, Centro Nacional de Investigaciones Cardiovasculares Carlos III (CNIC), Madrid, 28029, Spain.; CIBER de Enfermedades Cardiovasculares (CIBERCV), Madrid, 28029, Spain., Abascal F; Wellcome Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, UK., Vázquez J; Cardiovascular Proteomics Laboratory, Centro Nacional de Investigaciones Cardiovasculares Carlos III (CNIC), Madrid, 28029, Spain. jesus.vazquez@cnic.es.; CIBER de Enfermedades Cardiovasculares (CIBERCV), Madrid, 28029, Spain. jesus.vazquez@cnic.es., Tress ML; Bioinformatics Unit, Spanish National Cancer Research Centre (CNIO), Madrid, 28029, Spain. mtress@cnio.es.
Source: BMC genomics [BMC Genomics] 2025 Nov 21; Vol. 26 (1), pp. 1087. Date of Electronic Publication: 2025 Nov 21.
Publication Type: Journal Article
Journal Info: Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2164 (Electronic) Linking ISSN: 14712164 NLM ISO Abbreviation: BMC Genomics Subsets: MEDLINE
Database: MEDLINE Ultimate
Description
ISSN:1471-2164
DOI:10.1186/s12864-025-12238-w