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ClinBioNGS: A Clinical Bioinformatics Pipeline for Integrated Analysis of Somatic Next-Generation Sequencing Cancer Panels.

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Title: ClinBioNGS: A Clinical Bioinformatics Pipeline for Integrated Analysis of Somatic Next-Generation Sequencing Cancer Panels.
Authors: Marín R; Unit of Bioinformatics for Precision Oncology (UBOP), Institut Català d'Oncologia (ICO), L'Hospitalet de Llobregat, Barcelona, Spain.; Preclinical and Experimental Research in Thoracic Tumors (PRETT), Molecular Mechanisms and Experimental Therapy in Oncology Program (Oncobell), Institut d'Investigació Biomèdica de Bellvitge (IDIBELL), L'Hospitalet de Llobregat, Barcelona, Spain.; PhD Program in Bioinformatics, Universitat Autònoma de Barcelona, Bellaterra, Barcelona, Spain.; Hereditary Cancer Program, Molecular Mechanisms and Experimental Therapy in Oncology Program (Oncobell), Institut Català d'Oncologia (ICO), Institut d'Investigació Biomèdica de Bellvitge (IDIBELL), L'Hospitalet del Llobregat, Barcelona, Spain., Alay A; Unit of Bioinformatics for Precision Oncology (UBOP), Institut Català d'Oncologia (ICO), L'Hospitalet de Llobregat, Barcelona, Spain.; Preclinical and Experimental Research in Thoracic Tumors (PRETT), Molecular Mechanisms and Experimental Therapy in Oncology Program (Oncobell), Institut d'Investigació Biomèdica de Bellvitge (IDIBELL), L'Hospitalet de Llobregat, Barcelona, Spain., Ajenjo-Bauza M; Unit of Bioinformatics for Precision Oncology (UBOP), Institut Català d'Oncologia (ICO), L'Hospitalet de Llobregat, Barcelona, Spain.; Preclinical and Experimental Research in Thoracic Tumors (PRETT), Molecular Mechanisms and Experimental Therapy in Oncology Program (Oncobell), Institut d'Investigació Biomèdica de Bellvitge (IDIBELL), L'Hospitalet de Llobregat, Barcelona, Spain., Hijazo-Pechero S; Unit of Bioinformatics for Precision Oncology (UBOP), Institut Català d'Oncologia (ICO), L'Hospitalet de Llobregat, Barcelona, Spain.; Preclinical and Experimental Research in Thoracic Tumors (PRETT), Molecular Mechanisms and Experimental Therapy in Oncology Program (Oncobell), Institut d'Investigació Biomèdica de Bellvitge (IDIBELL), L'Hospitalet de Llobregat, Barcelona, Spain., Montironi C; Molecular Biology CORE. Center for Biomedical Diagnostics (CDB), Hospital Clínic de Barcelona, Barcelona, Spain.; Pathology Department, Center for Biomedical Diagnostics (CDB), Hospital Clínic de Barcelona, Barcelona, Spain.; Liver Cancer Translational Research Group, Liver Unit, Institut d'Investigacions Biomèdiques August Pi i Sunyer (IDIBAPS), Hospital Clínic, Universitat de Barcelona, Barcelona, Spain., Hernández-Illán E; Molecular Biology CORE. Center for Biomedical Diagnostics (CDB), Hospital Clínic de Barcelona, Barcelona, Spain.; Pathology Department, Center for Biomedical Diagnostics (CDB), Hospital Clínic de Barcelona, Barcelona, Spain., Jares P; Molecular Biology CORE. Center for Biomedical Diagnostics (CDB), Hospital Clínic de Barcelona, Barcelona, Spain.; Pathology Department, Center for Biomedical Diagnostics (CDB), Hospital Clínic de Barcelona, Barcelona, Spain.; Centro de Investigación Biomédica en Red de Cáncer (CIBERONC), Madrid, Spain.; Lymphoid Neoplasm Program, August Pi i Sunyer Biomedical Research Institute (IDIBAPS), Barcelona, Spain., Azuara D; Hereditary Cancer Program, Molecular Mechanisms and Experimental Therapy in Oncology Program (Oncobell), Institut Català d'Oncologia (ICO), Institut d'Investigació Biomèdica de Bellvitge (IDIBELL), L'Hospitalet del Llobregat, Barcelona, Spain.; Laboratory Core Molecular Analysis (L-CAM), Hospital Universitari de Bellvitge (HUB), Institut Català d'Oncologia (ICO), L'Hospitalet del Llobregat, Barcelona, Spain., Varela M; Laboratory Core Molecular Analysis (L-CAM), Hospital Universitari de Bellvitge (HUB), Institut Català d'Oncologia (ICO), L'Hospitalet del Llobregat, Barcelona, Spain.; Department of Pathology, Hospital Universitari de Bellvitge (HUB), L'Hospitalet de Llobregat, Barcelona, Spain., Vidal A; Laboratory Core Molecular Analysis (L-CAM), Hospital Universitari de Bellvitge (HUB), Institut Català d'Oncologia (ICO), L'Hospitalet del Llobregat, Barcelona, Spain.; Department of Pathology, Hospital Universitari de Bellvitge (HUB), L'Hospitalet de Llobregat, Barcelona, Spain., Puig-Butillé JA; Molecular Biology CORE. Center for Biomedical Diagnostics (CDB), Hospital Clínic de Barcelona, Barcelona, Spain., Lázaro C; Hereditary Cancer Program, Molecular Mechanisms and Experimental Therapy in Oncology Program (Oncobell), Institut Català d'Oncologia (ICO), Institut d'Investigació Biomèdica de Bellvitge (IDIBELL), L'Hospitalet del Llobregat, Barcelona, Spain.; Centro de Investigación Biomédica en Red de Cáncer (CIBERONC), Madrid, Spain.; Laboratory Core Molecular Analysis (L-CAM), Hospital Universitari de Bellvitge (HUB), Institut Català d'Oncologia (ICO), L'Hospitalet del Llobregat, Barcelona, Spain., Moreno V; Consorcio de Investigación Biomédica en Red de Epidemiologia y Salud Pública (CIBERESP), Madrid, Spain.; Oncology Data Analytics Program (ODAP), Institut Català d'Oncologia (ICO), Institut d'Investigació Biomèdica de Bellvitge (IDIBELL), L'Hospitalet de Llobregat, Barcelona, Spain.; Universitat de Barcelona Institute of Complex Systems (UBICS), Universitat de Barcelona (UB), Barcelona, Spain.; Department of Clinical Sciences, Faculty of Medicine and Health Sciences, Universitat de Barcelona (UB). L'Hospitalet de Llobregat, Barcelona, Spain., Cordero D; Unit of Bioinformatics for Precision Oncology (UBOP), Institut Català d'Oncologia (ICO), L'Hospitalet de Llobregat, Barcelona, Spain.; Preclinical and Experimental Research in Thoracic Tumors (PRETT), Molecular Mechanisms and Experimental Therapy in Oncology Program (Oncobell), Institut d'Investigació Biomèdica de Bellvitge (IDIBELL), L'Hospitalet de Llobregat, Barcelona, Spain.; Consorcio de Investigación Biomédica en Red de Epidemiologia y Salud Pública (CIBERESP), Madrid, Spain., Nadal E; Preclinical and Experimental Research in Thoracic Tumors (PRETT), Molecular Mechanisms and Experimental Therapy in Oncology Program (Oncobell), Institut d'Investigació Biomèdica de Bellvitge (IDIBELL), L'Hospitalet de Llobregat, Barcelona, Spain.; Department of Clinical Sciences, Faculty of Medicine and Health Sciences, Universitat de Barcelona (UB). L'Hospitalet de Llobregat, Barcelona, Spain.; Department of Medical Oncology, Institut Català d'Oncologia (ICO), L'Hospitalet de Llobregat, Barcelona, Spain., Solé X; Molecular Biology CORE. Center for Biomedical Diagnostics (CDB), Hospital Clínic de Barcelona, Barcelona, Spain.; Translational Genomics and Targeted Therapies in Solid Tumors, August Pi i Sunyer Biomedical Research Institute (IDIBAPS), Barcelona, Spain.
Source: JCO clinical cancer informatics [JCO Clin Cancer Inform] 2026 Jan; Vol. 10, pp. e2500221. Date of Electronic Publication: 2026 Jan 08.
Publication Type: Journal Article
Journal Info: Publisher: American Society of Clinical Oncology Country of Publication: United States NLM ID: 101708809 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2473-4276 (Electronic) Linking ISSN: 24734276 NLM ISO Abbreviation: JCO Clin Cancer Inform Subsets: MEDLINE
Database: MEDLINE Ultimate
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  Data: ClinBioNGS: A Clinical Bioinformatics Pipeline for Integrated Analysis of Somatic Next-Generation Sequencing Cancer Panels.
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  Data: <searchLink fieldCode="AU" term="%22Marín+R%22">Marín R</searchLink>; Unit of Bioinformatics for Precision Oncology (UBOP), Institut Català d'Oncologia (ICO), L'Hospitalet de Llobregat, Barcelona, Spain.; Preclinical and Experimental Research in Thoracic Tumors (PRETT), Molecular Mechanisms and Experimental Therapy in Oncology Program (Oncobell), Institut d'Investigació Biomèdica de Bellvitge (IDIBELL), L'Hospitalet de Llobregat, Barcelona, Spain.; PhD Program in Bioinformatics, Universitat Autònoma de Barcelona, Bellaterra, Barcelona, Spain.; Hereditary Cancer Program, Molecular Mechanisms and Experimental Therapy in Oncology Program (Oncobell), Institut Català d'Oncologia (ICO), Institut d'Investigació Biomèdica de Bellvitge (IDIBELL), L'Hospitalet del Llobregat, Barcelona, Spain.<br /><searchLink fieldCode="AU" term="%22Alay+A%22">Alay A</searchLink>; Unit of Bioinformatics for Precision Oncology (UBOP), Institut Català d'Oncologia (ICO), L'Hospitalet de Llobregat, Barcelona, Spain.; Preclinical and Experimental Research in Thoracic Tumors (PRETT), Molecular Mechanisms and Experimental Therapy in Oncology Program (Oncobell), Institut d'Investigació Biomèdica de Bellvitge (IDIBELL), L'Hospitalet de Llobregat, Barcelona, Spain.<br /><searchLink fieldCode="AU" term="%22Ajenjo-Bauza+M%22">Ajenjo-Bauza M</searchLink>; Unit of Bioinformatics for Precision Oncology (UBOP), Institut Català d'Oncologia (ICO), L'Hospitalet de Llobregat, Barcelona, Spain.; Preclinical and Experimental Research in Thoracic Tumors (PRETT), Molecular Mechanisms and Experimental Therapy in Oncology Program (Oncobell), Institut d'Investigació Biomèdica de Bellvitge (IDIBELL), L'Hospitalet de Llobregat, Barcelona, Spain.<br /><searchLink fieldCode="AU" term="%22Hijazo-Pechero+S%22">Hijazo-Pechero S</searchLink>; Unit of Bioinformatics for Precision Oncology (UBOP), Institut Català d'Oncologia (ICO), L'Hospitalet de Llobregat, Barcelona, Spain.; Preclinical and Experimental Research in Thoracic Tumors (PRETT), Molecular Mechanisms and Experimental Therapy in Oncology Program (Oncobell), Institut d'Investigació Biomèdica de Bellvitge (IDIBELL), L'Hospitalet de Llobregat, Barcelona, Spain.<br /><searchLink fieldCode="AU" term="%22Montironi+C%22">Montironi C</searchLink>; Molecular Biology CORE. Center for Biomedical Diagnostics (CDB), Hospital Clínic de Barcelona, Barcelona, Spain.; Pathology Department, Center for Biomedical Diagnostics (CDB), Hospital Clínic de Barcelona, Barcelona, Spain.; Liver Cancer Translational Research Group, Liver Unit, Institut d'Investigacions Biomèdiques August Pi i Sunyer (IDIBAPS), Hospital Clínic, Universitat de Barcelona, Barcelona, Spain.<br /><searchLink fieldCode="AU" term="%22Hernández-Illán+E%22">Hernández-Illán E</searchLink>; Molecular Biology CORE. Center for Biomedical Diagnostics (CDB), Hospital Clínic de Barcelona, Barcelona, Spain.; Pathology Department, Center for Biomedical Diagnostics (CDB), Hospital Clínic de Barcelona, Barcelona, Spain.<br /><searchLink fieldCode="AU" term="%22Jares+P%22">Jares P</searchLink>; Molecular Biology CORE. Center for Biomedical Diagnostics (CDB), Hospital Clínic de Barcelona, Barcelona, Spain.; Pathology Department, Center for Biomedical Diagnostics (CDB), Hospital Clínic de Barcelona, Barcelona, Spain.; Centro de Investigación Biomédica en Red de Cáncer (CIBERONC), Madrid, Spain.; Lymphoid Neoplasm Program, August Pi i Sunyer Biomedical Research Institute (IDIBAPS), Barcelona, Spain.<br /><searchLink fieldCode="AU" term="%22Azuara+D%22">Azuara D</searchLink>; Hereditary Cancer Program, Molecular Mechanisms and Experimental Therapy in Oncology Program (Oncobell), Institut Català d'Oncologia (ICO), Institut d'Investigació Biomèdica de Bellvitge (IDIBELL), L'Hospitalet del Llobregat, Barcelona, Spain.; Laboratory Core Molecular Analysis (L-CAM), Hospital Universitari de Bellvitge (HUB), Institut Català d'Oncologia (ICO), L'Hospitalet del Llobregat, Barcelona, Spain.<br /><searchLink fieldCode="AU" term="%22Varela+M%22">Varela M</searchLink>; Laboratory Core Molecular Analysis (L-CAM), Hospital Universitari de Bellvitge (HUB), Institut Català d'Oncologia (ICO), L'Hospitalet del Llobregat, Barcelona, Spain.; Department of Pathology, Hospital Universitari de Bellvitge (HUB), L'Hospitalet de Llobregat, Barcelona, Spain.<br /><searchLink fieldCode="AU" term="%22Vidal+A%22">Vidal A</searchLink>; Laboratory Core Molecular Analysis (L-CAM), Hospital Universitari de Bellvitge (HUB), Institut Català d'Oncologia (ICO), L'Hospitalet del Llobregat, Barcelona, Spain.; Department of Pathology, Hospital Universitari de Bellvitge (HUB), L'Hospitalet de Llobregat, Barcelona, Spain.<br /><searchLink fieldCode="AU" term="%22Puig-Butillé+JA%22">Puig-Butillé JA</searchLink>; Molecular Biology CORE. Center for Biomedical Diagnostics (CDB), Hospital Clínic de Barcelona, Barcelona, Spain.<br /><searchLink fieldCode="AU" term="%22Lázaro+C%22">Lázaro C</searchLink>; Hereditary Cancer Program, Molecular Mechanisms and Experimental Therapy in Oncology Program (Oncobell), Institut Català d'Oncologia (ICO), Institut d'Investigació Biomèdica de Bellvitge (IDIBELL), L'Hospitalet del Llobregat, Barcelona, Spain.; Centro de Investigación Biomédica en Red de Cáncer (CIBERONC), Madrid, Spain.; Laboratory Core Molecular Analysis (L-CAM), Hospital Universitari de Bellvitge (HUB), Institut Català d'Oncologia (ICO), L'Hospitalet del Llobregat, Barcelona, Spain.<br /><searchLink fieldCode="AU" term="%22Moreno+V%22">Moreno V</searchLink>; Consorcio de Investigación Biomédica en Red de Epidemiologia y Salud Pública (CIBERESP), Madrid, Spain.; Oncology Data Analytics Program (ODAP), Institut Català d'Oncologia (ICO), Institut d'Investigació Biomèdica de Bellvitge (IDIBELL), L'Hospitalet de Llobregat, Barcelona, Spain.; Universitat de Barcelona Institute of Complex Systems (UBICS), Universitat de Barcelona (UB), Barcelona, Spain.; Department of Clinical Sciences, Faculty of Medicine and Health Sciences, Universitat de Barcelona (UB). L'Hospitalet de Llobregat, Barcelona, Spain.<br /><searchLink fieldCode="AU" term="%22Cordero+D%22">Cordero D</searchLink>; Unit of Bioinformatics for Precision Oncology (UBOP), Institut Català d'Oncologia (ICO), L'Hospitalet de Llobregat, Barcelona, Spain.; Preclinical and Experimental Research in Thoracic Tumors (PRETT), Molecular Mechanisms and Experimental Therapy in Oncology Program (Oncobell), Institut d'Investigació Biomèdica de Bellvitge (IDIBELL), L'Hospitalet de Llobregat, Barcelona, Spain.; Consorcio de Investigación Biomédica en Red de Epidemiologia y Salud Pública (CIBERESP), Madrid, Spain.<br /><searchLink fieldCode="AU" term="%22Nadal+E%22">Nadal E</searchLink>; Preclinical and Experimental Research in Thoracic Tumors (PRETT), Molecular Mechanisms and Experimental Therapy in Oncology Program (Oncobell), Institut d'Investigació Biomèdica de Bellvitge (IDIBELL), L'Hospitalet de Llobregat, Barcelona, Spain.; Department of Clinical Sciences, Faculty of Medicine and Health Sciences, Universitat de Barcelona (UB). L'Hospitalet de Llobregat, Barcelona, Spain.; Department of Medical Oncology, Institut Català d'Oncologia (ICO), L'Hospitalet de Llobregat, Barcelona, Spain.<br /><searchLink fieldCode="AU" term="%22Solé+X%22">Solé X</searchLink>; Molecular Biology CORE. Center for Biomedical Diagnostics (CDB), Hospital Clínic de Barcelona, Barcelona, Spain.; Translational Genomics and Targeted Therapies in Solid Tumors, August Pi i Sunyer Biomedical Research Institute (IDIBAPS), Barcelona, Spain.
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  Data: <searchLink fieldCode="JN" term="%22101708809%22">JCO clinical cancer informatics</searchLink> [JCO Clin Cancer Inform] 2026 Jan; Vol. 10, pp. e2500221. <i>Date of Electronic Publication: </i>2026 Jan 08.
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