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A computational framework for sensitive tumor detection and accurate subtyping using shallow cell-free DNA methylome sequencing.

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Title: A computational framework for sensitive tumor detection and accurate subtyping using shallow cell-free DNA methylome sequencing.
Authors: Paoli M; Department of Cellular, Computational and Integrative Biology, University of Trento, Trento, Italy.; Department of Medical Oncology, Hospital of Prato, Azienda USL Toscana Centro, Prato, Italy., Galardi F; Translational Research Unit, Department of Medical Oncology, Hospital of Prato, Azienda USL Toscana Centro, Prato, Italy., Nardone A; Translational Research Unit, Department of Medical Oncology, Hospital of Prato, Azienda USL Toscana Centro, Prato, Italy., Biagioni C; Department of Medical Oncology, Hospital of Prato, Azienda USL Toscana Centro, Prato, Italy., Romagnoli D; Department of Medical Oncology, Hospital of Prato, Azienda USL Toscana Centro, Prato, Italy.; Department of Experimental and Clinical Biomedical Sciences, University of Florence, Florence, Italy., Di Donato S; Department of Medical Oncology, Hospital of Prato, Azienda USL Toscana Centro, Prato, Italy., Franceschini GM; Department of Cellular, Computational and Integrative Biology, University of Trento, Trento, Italy., Livraghi L; Department of Medical Oncology, Hospital of Prato, Azienda USL Toscana Centro, Prato, Italy., Pestrin M; Medical Oncology Unit, Azienda Sanitaria Universitaria Giuliano Isontina, Gorizia, Italy., Sanna G; Medical Oncology, Ospedale Civile SS Annunziata, Sassari, Italy., Risi E; Department of Medical Oncology, Hospital of Prato, Azienda USL Toscana Centro, Prato, Italy., Migliaccio I; Translational Research Unit, Department of Medical Oncology, Hospital of Prato, Azienda USL Toscana Centro, Prato, Italy., Moretti E; Department of Medical Oncology, Hospital of Prato, Azienda USL Toscana Centro, Prato, Italy., Malorni L; Department of Medical Oncology, Hospital of Prato, Azienda USL Toscana Centro, Prato, Italy.; Translational Research Unit, Department of Medical Oncology, Hospital of Prato, Azienda USL Toscana Centro, Prato, Italy., Biganzoli L; Department of Medical Oncology, Hospital of Prato, Azienda USL Toscana Centro, Prato, Italy., Demichelis F; Department of Cellular, Computational and Integrative Biology, University of Trento, Trento, Italy., Benelli M; Department of Medical Oncology, Hospital of Prato, Azienda USL Toscana Centro, Prato, Italy. matteo.benelli@unifi.it.; Department of Experimental and Clinical Biomedical Sciences, University of Florence, Florence, Italy. matteo.benelli@unifi.it.
Source: Genome medicine [Genome Med] 2026 Feb 03; Vol. 18 (1). Date of Electronic Publication: 2026 Feb 03.
Publication Type: Journal Article; Research Support, Non-U.S. Gov't
Journal Info: Publisher: BioMed Central Country of Publication: England NLM ID: 101475844 Publication Model: Electronic Cited Medium: Internet ISSN: 1756-994X (Electronic) Linking ISSN: 1756994X NLM ISO Abbreviation: Genome Med Subsets: MEDLINE
Database: MEDLINE Ultimate
Description
ISSN:1756-994X
DOI:10.1186/s13073-026-01603-3