One health viral metagenomics for pathogen surveillance: robust mNGS workflows for viral detection and genome recovery from swab and tissue specimens.
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| Title: | One health viral metagenomics for pathogen surveillance: robust mNGS workflows for viral detection and genome recovery from swab and tissue specimens. |
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| Authors: | Russell T; UCD Centre for Experimental Pathogen Host Research (CEPHR), University College Dublin, Dublin, D04 E1W1, Ireland.; UCD School of Medicine, University College Dublin, Dublin, D04 C7X2, Ireland., Formiconi E; UCD Centre for Experimental Pathogen Host Research (CEPHR), University College Dublin, Dublin, D04 E1W1, Ireland.; UCD School of Medicine, University College Dublin, Dublin, D04 C7X2, Ireland., Murphy A; UCD Conway Institute, University College Dublin, Dublin, D04 E1W1, Ireland., Hortion J; UCD Centre for Experimental Pathogen Host Research (CEPHR), University College Dublin, Dublin, D04 E1W1, Ireland.; UCD School of Medicine, University College Dublin, Dublin, D04 C7X2, Ireland., McElroy M; Department of Agriculture, Food, and the Marine Laboratories, Backweston, Celbridge, Kildare, W23 VW2C, Ireland., Casey M; Regional Veterinary Laboratories (RVL) Division, Department of Agriculture, Food and the Marine, Agriculture House, Backweston, Dublin, T12 XD51, Ireland., Cuartero LG; Department of Agriculture, Food, and the Marine Laboratories, Backweston, Celbridge, Kildare, W23 VW2C, Ireland., Mee JF; Teagasc, Moorepark Research Centre, Animal and Bioscience Research Department, Fermoy, P61 P302, Ireland., Jahns H; UCD School of Veterinary Medicine, University College Dublin, Dublin 4, D04 W6F6, Ireland., Kelly C; UCD Centre for Experimental Pathogen Host Research (CEPHR), University College Dublin, Dublin, D04 E1W1, Ireland.; Department of Infectious Diseases, Mater Misericordiae University Hospital, Dublin, D07 AX57, Ireland., Byrne J; UCD Centre for Experimental Pathogen Host Research (CEPHR), University College Dublin, Dublin, D04 E1W1, Ireland.; Department of Infectious Diseases, St Vincent's University Hospital, Dublin, D04 T6F4, Ireland., Feeney ER; UCD Centre for Experimental Pathogen Host Research (CEPHR), University College Dublin, Dublin, D04 E1W1, Ireland.; Department of Infectious Diseases, St Vincent's University Hospital, Dublin, D04 T6F4, Ireland., Mallon PW; UCD Centre for Experimental Pathogen Host Research (CEPHR), University College Dublin, Dublin, D04 E1W1, Ireland.; UCD School of Medicine, University College Dublin, Dublin, D04 C7X2, Ireland.; Department of Infectious Diseases, St Vincent's University Hospital, Dublin, D04 T6F4, Ireland., Gautier VW; UCD Centre for Experimental Pathogen Host Research (CEPHR), University College Dublin, Dublin, D04 E1W1, Ireland. virginie.gautier@ucd.ie.; UCD School of Medicine, University College Dublin, Dublin, D04 C7X2, Ireland. virginie.gautier@ucd.ie.; UCD Conway Institute, University College Dublin, Dublin, D04 E1W1, Ireland. virginie.gautier@ucd.ie. |
| Source: | BMC microbiology [BMC Microbiol] 2026 May 29; Vol. 26 (1). Date of Electronic Publication: 2026 May 29. |
| Publication Type: | Journal Article |
| Journal Info: | Publisher: BioMed Central Country of Publication: England NLM ID: 100966981 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2180 (Electronic) Linking ISSN: 14712180 NLM ISO Abbreviation: BMC Microbiol Subsets: MEDLINE |
| Database: | MEDLINE Ultimate |
| FullText | Text: Availability: 0 |
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| Header | DbId: mdl DbLabel: MEDLINE Ultimate An: 42215894 AccessLevel: 2 PubType: Academic Journal PubTypeId: academicJournal PreciseRelevancyScore: 0 |
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| Items | – Name: Title Label: Title Group: Ti Data: One health viral metagenomics for pathogen surveillance: robust mNGS workflows for viral detection and genome recovery from swab and tissue specimens. – Name: Author Label: Authors Group: Au Data: <searchLink fieldCode="AU" term="%22Russell+T%22">Russell T</searchLink>; UCD Centre for Experimental Pathogen Host Research (CEPHR), University College Dublin, Dublin, D04 E1W1, Ireland.; UCD School of Medicine, University College Dublin, Dublin, D04 C7X2, Ireland.<br /><searchLink fieldCode="AU" term="%22Formiconi+E%22">Formiconi E</searchLink>; UCD Centre for Experimental Pathogen Host Research (CEPHR), University College Dublin, Dublin, D04 E1W1, Ireland.; UCD School of Medicine, University College Dublin, Dublin, D04 C7X2, Ireland.<br /><searchLink fieldCode="AU" term="%22Murphy+A%22">Murphy A</searchLink>; UCD Conway Institute, University College Dublin, Dublin, D04 E1W1, Ireland.<br /><searchLink fieldCode="AU" term="%22Hortion+J%22">Hortion J</searchLink>; UCD Centre for Experimental Pathogen Host Research (CEPHR), University College Dublin, Dublin, D04 E1W1, Ireland.; UCD School of Medicine, University College Dublin, Dublin, D04 C7X2, Ireland.<br /><searchLink fieldCode="AU" term="%22McElroy+M%22">McElroy M</searchLink>; Department of Agriculture, Food, and the Marine Laboratories, Backweston, Celbridge, Kildare, W23 VW2C, Ireland.<br /><searchLink fieldCode="AU" term="%22Casey+M%22">Casey M</searchLink>; Regional Veterinary Laboratories (RVL) Division, Department of Agriculture, Food and the Marine, Agriculture House, Backweston, Dublin, T12 XD51, Ireland.<br /><searchLink fieldCode="AU" term="%22Cuartero+LG%22">Cuartero LG</searchLink>; Department of Agriculture, Food, and the Marine Laboratories, Backweston, Celbridge, Kildare, W23 VW2C, Ireland.<br /><searchLink fieldCode="AU" term="%22Mee+JF%22">Mee JF</searchLink>; Teagasc, Moorepark Research Centre, Animal and Bioscience Research Department, Fermoy, P61 P302, Ireland.<br /><searchLink fieldCode="AU" term="%22Jahns+H%22">Jahns H</searchLink>; UCD School of Veterinary Medicine, University College Dublin, Dublin 4, D04 W6F6, Ireland.<br /><searchLink fieldCode="AU" term="%22Kelly+C%22">Kelly C</searchLink>; UCD Centre for Experimental Pathogen Host Research (CEPHR), University College Dublin, Dublin, D04 E1W1, Ireland.; Department of Infectious Diseases, Mater Misericordiae University Hospital, Dublin, D07 AX57, Ireland.<br /><searchLink fieldCode="AU" term="%22Byrne+J%22">Byrne J</searchLink>; UCD Centre for Experimental Pathogen Host Research (CEPHR), University College Dublin, Dublin, D04 E1W1, Ireland.; Department of Infectious Diseases, St Vincent's University Hospital, Dublin, D04 T6F4, Ireland.<br /><searchLink fieldCode="AU" term="%22Feeney+ER%22">Feeney ER</searchLink>; UCD Centre for Experimental Pathogen Host Research (CEPHR), University College Dublin, Dublin, D04 E1W1, Ireland.; Department of Infectious Diseases, St Vincent's University Hospital, Dublin, D04 T6F4, Ireland.<br /><searchLink fieldCode="AU" term="%22Mallon+PW%22">Mallon PW</searchLink>; UCD Centre for Experimental Pathogen Host Research (CEPHR), University College Dublin, Dublin, D04 E1W1, Ireland.; UCD School of Medicine, University College Dublin, Dublin, D04 C7X2, Ireland.; Department of Infectious Diseases, St Vincent's University Hospital, Dublin, D04 T6F4, Ireland.<br /><searchLink fieldCode="AU" term="%22Gautier+VW%22">Gautier VW</searchLink>; UCD Centre for Experimental Pathogen Host Research (CEPHR), University College Dublin, Dublin, D04 E1W1, Ireland. virginie.gautier@ucd.ie.; UCD School of Medicine, University College Dublin, Dublin, D04 C7X2, Ireland. virginie.gautier@ucd.ie.; UCD Conway Institute, University College Dublin, Dublin, D04 E1W1, Ireland. virginie.gautier@ucd.ie. – Name: TitleSource Label: Source Group: Src Data: <searchLink fieldCode="JN" term="%22100966981%22">BMC microbiology</searchLink> [BMC Microbiol] 2026 May 29; Vol. 26 (1). <i>Date of Electronic Publication: </i>2026 May 29. – Name: TypePub Label: Publication Type Group: TypPub Data: Journal Article – Name: TitleSource Label: Journal Info Group: Src Data: <i>Publisher: </i><searchLink fieldCode="PB" term="%22BioMed+Central%22">BioMed Central </searchLink><i>Country of Publication: </i>England <i>NLM ID: </i>100966981 <i>Publication Model: </i>Electronic <i>Cited Medium: </i>Internet <i>ISSN: </i>1471-2180 (Electronic) <i>Linking ISSN: </i><searchLink fieldCode="IS" term="%2214712180%22">14712180 </searchLink><i>NLM ISO Abbreviation: </i>BMC Microbiol <i>Subsets: </i>MEDLINE |
| PLink | https://search.ebscohost.com/login.aspx?direct=true&site=eds-live&db=mdl&AN=42215894 |
| RecordInfo | BibRecord: BibEntity: Identifiers: – Type: doi Value: 10.1186/s12866-026-05105-5 Languages: – Code: eng Text: English Titles: – TitleFull: One health viral metagenomics for pathogen surveillance: robust mNGS workflows for viral detection and genome recovery from swab and tissue specimens. Type: main BibRelationships: HasContributorRelationships: – PersonEntity: Name: NameFull: Russell T – PersonEntity: Name: NameFull: Formiconi E – PersonEntity: Name: NameFull: Murphy A – PersonEntity: Name: NameFull: Hortion J – PersonEntity: Name: NameFull: McElroy M – PersonEntity: Name: NameFull: Casey M – PersonEntity: Name: NameFull: Cuartero LG – PersonEntity: Name: NameFull: Mee JF – PersonEntity: Name: NameFull: Jahns H – PersonEntity: Name: NameFull: Kelly C – PersonEntity: Name: NameFull: Byrne J – PersonEntity: Name: NameFull: Feeney ER – PersonEntity: Name: NameFull: Mallon PW – PersonEntity: Name: NameFull: Gautier VW IsPartOfRelationships: – BibEntity: Dates: – D: 29 M: 05 Text: 2026 May 29 Type: published Y: 2026 Identifiers: – Type: issn-electronic Value: 1471-2180 Numbering: – Type: volume Value: 26 – Type: issue Value: 1 Titles: – TitleFull: BMC microbiology Type: main |
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