Prognostic RNA-splicing archetypes in breast cancer identified by extended pre-training of histopathology foundation models.

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Title: Prognostic RNA-splicing archetypes in breast cancer identified by extended pre-training of histopathology foundation models.
Authors: Fournier L; Idiap Research Institute, Martigny, Switzerland.; Center of Translational Research in Onco-Hematology, Faculty of Medicine, University of Geneva, Geneva, Switzerland.; Swiss Institute of Bioinformatics, Lausanne, Switzerland., Haefliger G; Idiap Research Institute, Martigny, Switzerland.; Swiss Institute of Bioinformatics, Lausanne, Switzerland., Vernhes A; Idiap Research Institute, Martigny, Switzerland.; Swiss Institute of Bioinformatics, Lausanne, Switzerland., Jung V; Idiap Research Institute, Martigny, Switzerland.; Signal Processing Laboratory (LTS4), School of Engineering, Ecole Polytechnique Fédérale de Lausanne (EPFL), Lausanne, Switzerland., Loye L; Department for BioMedical Research, University of Bern, Bern, Switzerland.; Department of Digital Medicine, University of Bern, Bern, Switzerland., Du Bois V; Department of Oncology, Hôpitaux Universitaires de Genève, Geneva, Switzerland.; Faculty of Medicine, Université de Genève, Geneva, Switzerland., Labidi-Galy I; Department of Oncology, Hôpitaux Universitaires de Genève, Geneva, Switzerland.; Faculty of Medicine, Université de Genève, Geneva, Switzerland., Frossard P; Signal Processing Laboratory (LTS4), School of Engineering, Ecole Polytechnique Fédérale de Lausanne (EPFL), Lausanne, Switzerland., Letovanec I; Department of Histopathology, Central Institute, Valais Hospital, Sion, Switzerland.; Institute of Pathology, Centre Hospitalier Universitaire Vaudois CHUV, Lausanne, Switzerland., Vincent-Cuaz C; Signal Processing Laboratory (LTS4), School of Engineering, Ecole Polytechnique Fédérale de Lausanne (EPFL), Lausanne, Switzerland. cedric.vincent-cuaz@unibe.ch.; Department for BioMedical Research, University of Bern, Bern, Switzerland. cedric.vincent-cuaz@unibe.ch.; Department of Digital Medicine, University of Bern, Bern, Switzerland. cedric.vincent-cuaz@unibe.ch., Luisier R; Swiss Institute of Bioinformatics, Lausanne, Switzerland. raphaelle.luisier@unibe.ch.; Department for BioMedical Research, University of Bern, Bern, Switzerland. raphaelle.luisier@unibe.ch.; Department of Digital Medicine, University of Bern, Bern, Switzerland. raphaelle.luisier@unibe.ch.
Source: Nature communications [Nat Commun] 2026 Jul 07. Date of Electronic Publication: 2026 Jul 07.
Publication Type: Journal Article
Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE
Database: MEDLINE Ultimate
Description
ISSN:2041-1723
DOI:10.1038/s41467-026-75217-z