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Mitochondrial-related gene expression changes are sensitive to agonal-pH state: implications for brain disorders.

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Title: Mitochondrial-related gene expression changes are sensitive to agonal-pH state: implications for brain disorders.
Authors: Vawter, M. P., Tomita, H., Meng, F., Bolstad, B., Li, J., Evans, S., Choudary, P., Atz, M., Shao, L., Neal, C., Walsh, D. M., Burmeister, M., Speed, T., Myers, R., Jones, E. G., Watson, S. J., Akil, H., Bunney, W. E.
Source: Molecular Psychiatry. Jul2006, Vol. 11 Issue 7, p663-679. 17p. 4 Black and White Photographs, 5 Charts, 2 Graphs.
Subjects: Mitochondrial pathology, Bipolar disorder, Mitochondria, Schizophrenia, Molecular chaperones, Apoptosis, Neurosciences
Abstract: Mitochondrial defects in gene expression have been implicated in the pathophysiology of bipolar disorder and schizophrenia. We have now contrasted control brains with low pH versus high pH and showed that 28% of genes in mitochondrial-related pathways meet criteria for differential expression. A majority of genes in the mitochondrial, chaperone and proteasome pathways of nuclear DNA-encoded gene expression were decreased with decreased brain pH, whereas a majority of genes in the apoptotic and reactive oxygen stress pathways showed an increased gene expression with a decreased brain pH. There was a significant increase in mitochondrial DNA copy number and mitochondrial DNA gene expression with increased agonal duration. To minimize effects of agonal-pH state on mood disorder comparisons, two classic approaches were used, removing all subjects with low pH and agonal factors from analysis, or grouping low and high pH as a separate variable. Three groups of potential candidate genes emerged that may be mood disorder related: (a) genes that showed no sensitivity to pH but were differentially expressed in bipolar disorder or major depressive disorder; (b) genes that were altered by agonal-pH in one direction but altered in mood disorder in the opposite direction to agonal-pH and (c) genes with agonal-pH sensitivity that displayed the same direction of changes in mood disorder. Genes from these categories such as NR4A1 and HSPA2 were confirmed with Q-PCR. The interpretation of postmortem brain studies involving broad mitochondrial gene expression and related pathway alterations must be monitored against the strong effect of agonal-pH state. Genes with the least sensitivity to agonal-pH could present a starting point for candidate gene search in neuropsychiatric disorders.Molecular Psychiatry (2006) 11, 663–679. doi:10.1038/sj.mp.4001830; published online 25 April 2006 [ABSTRACT FROM AUTHOR]
Copyright of Molecular Psychiatry is the property of Springer Nature and its content may not be copied or emailed to multiple sites without the copyright holder's express written permission. Additionally, content may not be used with any artificial intelligence tools or machine learning technologies. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)
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  Data: <searchLink fieldCode="AR" term="%22Vawter%2C+M%2E+P%2E%22">Vawter, M. P.</searchLink><br /><searchLink fieldCode="AR" term="%22Tomita%2C+H%2E%22">Tomita, H.</searchLink><br /><searchLink fieldCode="AR" term="%22Meng%2C+F%2E%22">Meng, F.</searchLink><br /><searchLink fieldCode="AR" term="%22Bolstad%2C+B%2E%22">Bolstad, B.</searchLink><br /><searchLink fieldCode="AR" term="%22Li%2C+J%2E%22">Li, J.</searchLink><br /><searchLink fieldCode="AR" term="%22Evans%2C+S%2E%22">Evans, S.</searchLink><br /><searchLink fieldCode="AR" term="%22Choudary%2C+P%2E%22">Choudary, P.</searchLink><br /><searchLink fieldCode="AR" term="%22Atz%2C+M%2E%22">Atz, M.</searchLink><br /><searchLink fieldCode="AR" term="%22Shao%2C+L%2E%22">Shao, L.</searchLink><br /><searchLink fieldCode="AR" term="%22Neal%2C+C%2E%22">Neal, C.</searchLink><br /><searchLink fieldCode="AR" term="%22Walsh%2C+D%2E+M%2E%22">Walsh, D. M.</searchLink><br /><searchLink fieldCode="AR" term="%22Burmeister%2C+M%2E%22">Burmeister, M.</searchLink><br /><searchLink fieldCode="AR" term="%22Speed%2C+T%2E%22">Speed, T.</searchLink><br /><searchLink fieldCode="AR" term="%22Myers%2C+R%2E%22">Myers, R.</searchLink><br /><searchLink fieldCode="AR" term="%22Jones%2C+E%2E+G%2E%22">Jones, E. G.</searchLink><br /><searchLink fieldCode="AR" term="%22Watson%2C+S%2E+J%2E%22">Watson, S. J.</searchLink><br /><searchLink fieldCode="AR" term="%22Akil%2C+H%2E%22">Akil, H.</searchLink><br /><searchLink fieldCode="AR" term="%22Bunney%2C+W%2E+E%2E%22">Bunney, W. E.</searchLink>
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  Data: <searchLink fieldCode="JN" term="%22Molecular+Psychiatry%22">Molecular Psychiatry</searchLink>. Jul2006, Vol. 11 Issue 7, p663-679. 17p. 4 Black and White Photographs, 5 Charts, 2 Graphs.
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  Data: Mitochondrial defects in gene expression have been implicated in the pathophysiology of bipolar disorder and schizophrenia. We have now contrasted control brains with low pH versus high pH and showed that 28% of genes in mitochondrial-related pathways meet criteria for differential expression. A majority of genes in the mitochondrial, chaperone and proteasome pathways of nuclear DNA-encoded gene expression were decreased with decreased brain pH, whereas a majority of genes in the apoptotic and reactive oxygen stress pathways showed an increased gene expression with a decreased brain pH. There was a significant increase in mitochondrial DNA copy number and mitochondrial DNA gene expression with increased agonal duration. To minimize effects of agonal-pH state on mood disorder comparisons, two classic approaches were used, removing all subjects with low pH and agonal factors from analysis, or grouping low and high pH as a separate variable. Three groups of potential candidate genes emerged that may be mood disorder related: (a) genes that showed no sensitivity to pH but were differentially expressed in bipolar disorder or major depressive disorder; (b) genes that were altered by agonal-pH in one direction but altered in mood disorder in the opposite direction to agonal-pH and (c) genes with agonal-pH sensitivity that displayed the same direction of changes in mood disorder. Genes from these categories such as NR4A1 and HSPA2 were confirmed with Q-PCR. The interpretation of postmortem brain studies involving broad mitochondrial gene expression and related pathway alterations must be monitored against the strong effect of agonal-pH state. Genes with the least sensitivity to agonal-pH could present a starting point for candidate gene search in neuropsychiatric disorders.Molecular Psychiatry (2006) 11, 663–679. doi:10.1038/sj.mp.4001830; published online 25 April 2006 [ABSTRACT FROM AUTHOR]
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  Data: <i>Copyright of Molecular Psychiatry is the property of Springer Nature and its content may not be copied or emailed to multiple sites without the copyright holder's express written permission. Additionally, content may not be used with any artificial intelligence tools or machine learning technologies. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract.</i> (Copyright applies to all Abstracts.)
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