Comprehensive evaluation and practical guideline of gating methods for high-dimensional cytometry data: manual gating, unsupervised clustering, and auto-gating.
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| Title: | Comprehensive evaluation and practical guideline of gating methods for high-dimensional cytometry data: manual gating, unsupervised clustering, and auto-gating. |
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| Authors: | Liu P; Department of Biostatistics, School of Public Health, University of Pittsburgh, 130 De Soto St., Pittsburgh, PA 15261, US., Pan Y; Department of Bioinformatics and Computational Biology, University of Texas MD Anderson Cancer Center, 1400 Pressler St., Houston, TX 77030, US., Chang HC; Department of Biostatistics, School of Public Health, University of Pittsburgh, 130 De Soto St., Pittsburgh, PA 15261, US., Wang W; Department of Biostatistics, School of Public Health, University of Pittsburgh, 130 De Soto St., Pittsburgh, PA 15261, US., Fang Y; Department of Biostatistics, School of Public Health, University of Pittsburgh, 130 De Soto St., Pittsburgh, PA 15261, US., Xue X; Department of Biostatistics, School of Public Health, University of Pittsburgh, 130 De Soto St., Pittsburgh, PA 15261, US., Zou J; Department of Biostatistics, School of Public Health, University of Pittsburgh, 130 De Soto St., Pittsburgh, PA 15261, US., Toothaker JM; Department of Immunology, University of Pittsburgh, 5051 Centre Avenue, Pittsburgh, PA 15213, US.; Department of Pediatrics, Yale University, 15 York Street New Haven, CT 06510, US., Olaloye O; Department of Pediatrics, Yale University, 15 York Street New Haven, CT 06510, US., Santiago EG; Department of Pediatrics, Yale University, 15 York Street New Haven, CT 06510, US., McCourt B; Department of Pediatrics, Yale University, 15 York Street New Haven, CT 06510, US., Mitsialis V; Department of Pediatrics, Division of Gastroenterology, Hepatology, and Nutrition, Boston Children's Hospital and Department of Pediatrics, Harvard Medical School, 300 Longwood Ave., Boston, MA 02115, US.; Department of Medicine, Division of Gastroenterology, Hepatology, and Endoscopy, Brigham & Women's Hospital and Department of Medicine, Harvard Medical School, 300 Longwood Ave., Boston, MA 02115, US., Presicce P; Division of Neonatology and Developmental Biology, David Geffen School of Medicine at the University of California Los Angeles, 757 Westwood Plaza, Los Angeles, CA 90095, US., Kallapur SG; Division of Neonatology and Developmental Biology, David Geffen School of Medicine at the University of California Los Angeles, 757 Westwood Plaza, Los Angeles, CA 90095, US., Snapper SB; Department of Pediatrics, Division of Gastroenterology, Hepatology, and Nutrition, Boston Children's Hospital and Department of Pediatrics, Harvard Medical School, 300 Longwood Ave., Boston, MA 02115, US.; Department of Medicine, Division of Gastroenterology, Hepatology, and Endoscopy, Brigham & Women's Hospital and Department of Medicine, Harvard Medical School, 300 Longwood Ave., Boston, MA 02115, US., Liu JJ; Drug Discovery Institute, School of Medicine, University of Pittsburgh, 700 Technology Dr, Pittsburgh, PA 15219, US.; Pittsburgh Liver Research Center, School of Medicine, University of Pittsburgh, 200 Lothrop Street, Pittsburgh, PA 15261, US., Tseng GC; Department of Biostatistics, School of Public Health, University of Pittsburgh, 130 De Soto St., Pittsburgh, PA 15261, US.; Computational and Systems Biology, School of Medicine, University of Pittsburgh, 3420 Forbes Avenue, Pittsburgh, PA 15213, US., Konnikova L; Department of Pediatrics, Yale University, 15 York Street New Haven, CT 06510, US.; Division of Neonatology and Developmental Biology, David Geffen School of Medicine at the University of California Los Angeles, 757 Westwood Plaza, Los Angeles, CA 90095, US.; Department of Obstetrics, Gynecology and Reproductive Sciences, Yale University, 333 Cedar Street, New Haven, CT 06510, US.; Department of Immunobiology, Yale University, 300 Cedar Street, New Haven, CT 06520, US.; Program in Human and Translational Immunology, Yale University, 300 Cedar Street, New Haven, CT 06520, US.; Program in Translational Biomedicine, Yale University, 300 Cedar Street, New Haven, CT 06520, US.; Center for Systems and Engineering Immunology, Yale University, 100 College St., New Haven, CT 06510, US., Liu S; Drug Discovery Institute, School of Medicine, University of Pittsburgh, 700 Technology Dr, Pittsburgh, PA 15219, US.; Pittsburgh Liver Research Center, School of Medicine, University of Pittsburgh, 200 Lothrop Street, Pittsburgh, PA 15261, US.; Computational and Systems Biology, School of Medicine, University of Pittsburgh, 3420 Forbes Avenue, Pittsburgh, PA 15213, US.; Department of Pharmacology and Chemical Biology, School of Medicine, University of Pittsburgh, 200 Lothrop St., Pittsburgh, PA 15261, US.; Hillman Cancer Center, University of Pittsburgh, 5150 Centre Ave., Pittsburgh, PA 15232, US. |
| Source: | Briefings in bioinformatics [Brief Bioinform] 2024 Nov 22; Vol. 26 (1). |
| Publication Type: | Journal Article |
| Journal Info: | Publisher: Oxford University Press Country of Publication: England NLM ID: 100912837 Publication Model: Print Cited Medium: Internet ISSN: 1477-4054 (Electronic) Linking ISSN: 14675463 NLM ISO Abbreviation: Brief Bioinform Subsets: MEDLINE |
| Database: | MEDLINE Ultimate |
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| Header | DbId: mdl DbLabel: MEDLINE Ultimate An: 39656848 AccessLevel: 2 PubType: Academic Journal PubTypeId: academicJournal PreciseRelevancyScore: 0 |
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| Items | – Name: Title Label: Title Group: Ti Data: Comprehensive evaluation and practical guideline of gating methods for high-dimensional cytometry data: manual gating, unsupervised clustering, and auto-gating. – Name: Author Label: Authors Group: Au Data: <searchLink fieldCode="AU" term="%22Liu+P%22">Liu P</searchLink>; Department of Biostatistics, School of Public Health, University of Pittsburgh, 130 De Soto St., Pittsburgh, PA 15261, US.<br /><searchLink fieldCode="AU" term="%22Pan+Y%22">Pan Y</searchLink>; Department of Bioinformatics and Computational Biology, University of Texas MD Anderson Cancer Center, 1400 Pressler St., Houston, TX 77030, US.<br /><searchLink fieldCode="AU" term="%22Chang+HC%22">Chang HC</searchLink>; Department of Biostatistics, School of Public Health, University of Pittsburgh, 130 De Soto St., Pittsburgh, PA 15261, US.<br /><searchLink fieldCode="AU" term="%22Wang+W%22">Wang W</searchLink>; Department of Biostatistics, School of Public Health, University of Pittsburgh, 130 De Soto St., Pittsburgh, PA 15261, US.<br /><searchLink fieldCode="AU" term="%22Fang+Y%22">Fang Y</searchLink>; Department of Biostatistics, School of Public Health, University of Pittsburgh, 130 De Soto St., Pittsburgh, PA 15261, US.<br /><searchLink fieldCode="AU" term="%22Xue+X%22">Xue X</searchLink>; Department of Biostatistics, School of Public Health, University of Pittsburgh, 130 De Soto St., Pittsburgh, PA 15261, US.<br /><searchLink fieldCode="AU" term="%22Zou+J%22">Zou J</searchLink>; Department of Biostatistics, School of Public Health, University of Pittsburgh, 130 De Soto St., Pittsburgh, PA 15261, US.<br /><searchLink fieldCode="AU" term="%22Toothaker+JM%22">Toothaker JM</searchLink>; Department of Immunology, University of Pittsburgh, 5051 Centre Avenue, Pittsburgh, PA 15213, US.; Department of Pediatrics, Yale University, 15 York Street New Haven, CT 06510, US.<br /><searchLink fieldCode="AU" term="%22Olaloye+O%22">Olaloye O</searchLink>; Department of Pediatrics, Yale University, 15 York Street New Haven, CT 06510, US.<br /><searchLink fieldCode="AU" term="%22Santiago+EG%22">Santiago EG</searchLink>; Department of Pediatrics, Yale University, 15 York Street New Haven, CT 06510, US.<br /><searchLink fieldCode="AU" term="%22McCourt+B%22">McCourt B</searchLink>; Department of Pediatrics, Yale University, 15 York Street New Haven, CT 06510, US.<br /><searchLink fieldCode="AU" term="%22Mitsialis+V%22">Mitsialis V</searchLink>; Department of Pediatrics, Division of Gastroenterology, Hepatology, and Nutrition, Boston Children's Hospital and Department of Pediatrics, Harvard Medical School, 300 Longwood Ave., Boston, MA 02115, US.; Department of Medicine, Division of Gastroenterology, Hepatology, and Endoscopy, Brigham & Women's Hospital and Department of Medicine, Harvard Medical School, 300 Longwood Ave., Boston, MA 02115, US.<br /><searchLink fieldCode="AU" term="%22Presicce+P%22">Presicce P</searchLink>; Division of Neonatology and Developmental Biology, David Geffen School of Medicine at the University of California Los Angeles, 757 Westwood Plaza, Los Angeles, CA 90095, US.<br /><searchLink fieldCode="AU" term="%22Kallapur+SG%22">Kallapur SG</searchLink>; Division of Neonatology and Developmental Biology, David Geffen School of Medicine at the University of California Los Angeles, 757 Westwood Plaza, Los Angeles, CA 90095, US.<br /><searchLink fieldCode="AU" term="%22Snapper+SB%22">Snapper SB</searchLink>; Department of Pediatrics, Division of Gastroenterology, Hepatology, and Nutrition, Boston Children's Hospital and Department of Pediatrics, Harvard Medical School, 300 Longwood Ave., Boston, MA 02115, US.; Department of Medicine, Division of Gastroenterology, Hepatology, and Endoscopy, Brigham & Women's Hospital and Department of Medicine, Harvard Medical School, 300 Longwood Ave., Boston, MA 02115, US.<br /><searchLink fieldCode="AU" term="%22Liu+JJ%22">Liu JJ</searchLink>; Drug Discovery Institute, School of Medicine, University of Pittsburgh, 700 Technology Dr, Pittsburgh, PA 15219, US.; Pittsburgh Liver Research Center, School of Medicine, University of Pittsburgh, 200 Lothrop Street, Pittsburgh, PA 15261, US.<br /><searchLink fieldCode="AU" term="%22Tseng+GC%22">Tseng GC</searchLink>; Department of Biostatistics, School of Public Health, University of Pittsburgh, 130 De Soto St., Pittsburgh, PA 15261, US.; Computational and Systems Biology, School of Medicine, University of Pittsburgh, 3420 Forbes Avenue, Pittsburgh, PA 15213, US.<br /><searchLink fieldCode="AU" term="%22Konnikova+L%22">Konnikova L</searchLink>; Department of Pediatrics, Yale University, 15 York Street New Haven, CT 06510, US.; Division of Neonatology and Developmental Biology, David Geffen School of Medicine at the University of California Los Angeles, 757 Westwood Plaza, Los Angeles, CA 90095, US.; Department of Obstetrics, Gynecology and Reproductive Sciences, Yale University, 333 Cedar Street, New Haven, CT 06510, US.; Department of Immunobiology, Yale University, 300 Cedar Street, New Haven, CT 06520, US.; Program in Human and Translational Immunology, Yale University, 300 Cedar Street, New Haven, CT 06520, US.; Program in Translational Biomedicine, Yale University, 300 Cedar Street, New Haven, CT 06520, US.; Center for Systems and Engineering Immunology, Yale University, 100 College St., New Haven, CT 06510, US.<br /><searchLink fieldCode="AU" term="%22Liu+S%22">Liu S</searchLink>; Drug Discovery Institute, School of Medicine, University of Pittsburgh, 700 Technology Dr, Pittsburgh, PA 15219, US.; Pittsburgh Liver Research Center, School of Medicine, University of Pittsburgh, 200 Lothrop Street, Pittsburgh, PA 15261, US.; Computational and Systems Biology, School of Medicine, University of Pittsburgh, 3420 Forbes Avenue, Pittsburgh, PA 15213, US.; Department of Pharmacology and Chemical Biology, School of Medicine, University of Pittsburgh, 200 Lothrop St., Pittsburgh, PA 15261, US.; Hillman Cancer Center, University of Pittsburgh, 5150 Centre Ave., Pittsburgh, PA 15232, US. – Name: TitleSource Label: Source Group: Src Data: <searchLink fieldCode="JN" term="%22100912837%22">Briefings in bioinformatics</searchLink> [Brief Bioinform] 2024 Nov 22; Vol. 26 (1). – Name: TypePub Label: Publication Type Group: TypPub Data: Journal Article – Name: TitleSource Label: Journal Info Group: Src Data: <i>Publisher: </i><searchLink fieldCode="PB" term="%22Oxford+University+Press%22">Oxford University Press </searchLink><i>Country of Publication: </i>England <i>NLM ID: </i>100912837 <i>Publication Model: </i>Print <i>Cited Medium: </i>Internet <i>ISSN: </i>1477-4054 (Electronic) <i>Linking ISSN: </i><searchLink fieldCode="IS" term="%2214675463%22">14675463 </searchLink><i>NLM ISO Abbreviation: </i>Brief Bioinform <i>Subsets: </i>MEDLINE |
| PLink | https://search.ebscohost.com/login.aspx?direct=true&site=eds-live&db=mdl&AN=39656848 |
| RecordInfo | BibRecord: BibEntity: Identifiers: – Type: doi Value: 10.1093/bib/bbae633 Languages: – Code: eng Text: English Titles: – TitleFull: Comprehensive evaluation and practical guideline of gating methods for high-dimensional cytometry data: manual gating, unsupervised clustering, and auto-gating. Type: main BibRelationships: HasContributorRelationships: – PersonEntity: Name: NameFull: Liu P – PersonEntity: Name: NameFull: Pan Y – PersonEntity: Name: NameFull: Chang HC – PersonEntity: Name: NameFull: Wang W – PersonEntity: Name: NameFull: Fang Y – PersonEntity: Name: NameFull: Xue X – PersonEntity: Name: NameFull: Zou J – PersonEntity: Name: NameFull: Toothaker JM – PersonEntity: Name: NameFull: Olaloye O – PersonEntity: Name: NameFull: Santiago EG – PersonEntity: Name: NameFull: McCourt B – PersonEntity: Name: NameFull: Mitsialis V – PersonEntity: Name: NameFull: Presicce P – PersonEntity: Name: NameFull: Kallapur SG – PersonEntity: Name: NameFull: Snapper SB – PersonEntity: Name: NameFull: Liu JJ – PersonEntity: Name: NameFull: Tseng GC – PersonEntity: Name: NameFull: Konnikova L – PersonEntity: Name: NameFull: Liu S IsPartOfRelationships: – BibEntity: Dates: – D: 22 M: 11 Text: 2024 Nov 22 Type: published Y: 2024 Identifiers: – Type: issn-electronic Value: 1477-4054 Numbering: – Type: volume Value: 26 – Type: issue Value: 1 Titles: – TitleFull: Briefings in bioinformatics Type: main |
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